Resources

Published, deposited and shared resources

The raw data and code for Liu et al., "Persistent enrichment of multidrug resistant Klebsiella in oral and nasal communities during long-term starvation" (2024), Microbiome: HERE and HERE.

Appendix tables, code, raw reads, and source data for Liu et al., "Rapid Specific Detection of Oral Bacteria Using Cas13-based SHERLOCK" (2023), JOM: HERE.

Reproducible narrative methods for assembly and analysis of HMT-352 genomes by Dan Utter (Nie et al., 2022, mSystems). Download HERE.

Narrative workflow for analyzing 16S rRNA profiling by Dan Utter (Chipashvili et al., 2021, Cell Host & Microbe). Download HERE.

Constructing phylogenome tree of select Actinomyces strains using gene clusters by Dan Utter (Utter et al., 2020, ISME). Download HERE.